While most bugs and issues are managed using the astropy issue tracker, this document lists issues that are too difficult to fix, may require some intervention from the user to work around, or are caused by bugs in other projects or packages.
Issues listed on this page are grouped into two categories: The first is known
issues and shortcomings in actual algorithms and interfaces that currently do
not have fixes or workarounds, and that users should be aware of when writing
code that uses
astropy. Some of those issues are still platform-specific,
while others are very general. The second category is of common issues that come
up when configuring, building, or installing
astropy. This also includes
cases where the test suite can report false negatives depending on the context/
platform on which it was run.
Quantities are subclassed from
ndarray and while we have
numpy functions will work well with them, they do not always
work in functions from
scipy or other packages that use
internally, but ignore the subclass. Furthermore, at a few places in
itself we cannot control the behaviour. For instance, care must be taken when
setting array slices using Quantities:
>>> import astropy.units as u >>> import numpy as np >>> a = np.ones(4) >>> a[2:3] = 2*u.kg >>> a array([1., 1., 2., 1.])
>>> a = np.ones(4) >>> a[2:3] = 1*u.cm/u.m >>> a array([1., 1., 1., 1.])
Either set single array entries or use lists of Quantities:
>>> a = np.ones(4) >>> a = 1*u.cm/u.m >>> a array([1. , 1. , 0.01, 1. ])
>>> a = np.ones(4) >>> a[2:3] = [1*u.cm/u.m] >>> a array([1. , 1. , 0.01, 1. ])
Both will throw an exception if units do not cancel, e.g.:
>>> a = np.ones(4) >>> a = 1*u.cm Traceback (most recent call last): ... TypeError: only dimensionless scalar quantities can be converted to Python scalars
Trying the following example will throw an UnitConversionError on NumPy before version 1.20 and ignore the unit in later versions:
>>> my_quantity = u.Quantity(1, u.m) >>> np.full(10, my_quantity) Traceback (most recent call last): ... UnitConversionError: 'm' (length) and '' (dimensionless) are not convertible
A workaround for this at the moment would be to do:
>>> np.full(10, 1) << u.m <Quantity [1., 1., 1., 1., 1., 1., 1., 1., 1., 1.] m>
arange function does not work either:
>>> np.arange(0 * u.m, 10 * u.m, 1 * u.m) Traceback (most recent call last): ... TypeError: only dimensionless scalar quantities can be converted to Python scalars
Workarounds include moving the units outside of the call to
>>> np.arange(0, 10, 1) * u.m <Quantity [0., 1., 2., 3., 4., 5., 6., 7., 8., 9.] m>
linspace does work:
>>> np.linspace(0 * u.m, 9 * u.m, 10) <Quantity [0., 1., 2., 3., 4., 5., 6., 7., 8., 9.] m>
>>> q = u.Quantity(np.arange(10.), u.m) >>> b = np.broadcast_to(q, (2, len(q))) >>> b array([[0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], [0., 1., 2., 3., 4., 5., 6., 7., 8., 9.]]) >>> b2 = np.broadcast_to(q, (2, len(q)), subok=True) >>> b2 <Quantity [[0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], [0., 1., 2., 3., 4., 5., 6., 7., 8., 9.]] m>
This is analogous to the case of passing a Quantity to
>>> a = np.array(q) >>> a array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.]) >>> a2 = np.array(q, subok=True) >>> a2 <Quantity [0., 1., 2., 3., 4., 5., 6., 7., 8., 9.] m>
On Hurd and possibly other platforms,
flush() on memory-mapped files are not
implemented, so writing changes to a mmap’d FITS file may not be reliable and is
thus disabled. Attempting to open a FITS file in writeable mode with mmap will
result in a warning (and mmap will be disabled on the file automatically).
Colored printing of log messages and other colored text does work in Windows, but only when running in the IPython console. Colors are not currently supported in the basic Python command-line interpreter on Windows.
int() goes through
numpy.int_ do not go through
means that an upstream fix in NumPy is required in order for
astropy.units to control decomposing the input in these functions:
>>> np.int64((15 * u.km) / (15 * u.imperial.foot)) 1 >>> np.int_((15 * u.km) / (15 * u.imperial.foot)) 1 >>> int((15 * u.km) / (15 * u.imperial.foot)) 3280
To convert a dimensionless
Quantity to an integer, it is
therefore recommended to use
Attempting to use
float or NumPy’s
numpy.float on a standard
complex number (e.g.,
5 + 6j) results in a
numpy.float on a complex number from
numpy.complex128) drops the imaginary component and
numpy.ComplexWarning. This inconsistency persists between
Quantity instances based on standard and NumPy
complex numbers. To get the real part of a complex number, it is
recommended to use
Structured units deserialization with
pickle may cause segmentation
fault in big-endian machine with
astropy in the Anaconda Python distribution using
pip can result
in a corrupted install with a mix of files from the old version and the new
version. Anaconda users should update with
conda update astropy. There
may be a brief delay between the release of
astropy on PyPI and its release
conda package manager; users can check the availability of new
conda search astropy.
On MacOS X, you may see the following error when running
... ValueError: unknown locale: UTF-8
This is due to the
LC_CTYPE environment variable being incorrectly set to
UTF-8 by default, which is not a valid locale setting.
On MacOS X or Linux (or other platforms) you may also encounter the following error:
... stderr = stderr.decode(stdio_encoding) TypeError: decode() argument 1 must be str, not None
This also indicates that your locale is not set correctly.
To fix either of these issues, set this environment variable, as well as the
LC_ALL environment variables to e.g.
en_US.UTF-8 using, in
the case of
export LANG="en_US.UTF-8" export LC_ALL="en_US.UTF-8" export LC_CTYPE="en_US.UTF-8"
To avoid any issues in future, you should add this line to your e.g.
To test these changes, open a new terminal and type
locale, and you should
see something like:
$ locale LANG="en_US.UTF-8" LC_COLLATE="en_US.UTF-8" LC_CTYPE="en_US.UTF-8" LC_MESSAGES="en_US.UTF-8" LC_MONETARY="en_US.UTF-8" LC_NUMERIC="en_US.UTF-8" LC_TIME="en_US.UTF-8" LC_ALL="en_US.UTF-8"
If so, you can go ahead and try running
pip again (in the new
When running the Astropy tests using
astropy.test() in an IPython
interpreter, some of the tests in the
fail depending on the version of IPython or other factors.
This is due to mutually incompatible behaviors in IPython and pytest, and is
not due to a problem with the test itself or the feature being tested.